ETE Toolkit - Support

Download and Install

Linux

Install (optional) dependencies: python-qt4, python-lxml python-six and python-numpy

In Ubuntu, Mint and other Debian based distributions (APT)

sudo apt-get install python-numpy python-qt4 python-lxml python-six

In CentOS, Fedora, etc (YUM)

sudo yum install PyQt4.x86_64 numpy.x86_64 python-lxml.x86_64 python-six.noarch

No sudo permission?

# Download and install Minconda on your home directory
wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O Miniconda-latest-Linux-x86_64.sh
bash Miniconda-latest-Linux-x86_64.sh -b -p ~/anaconda_ete/
export PATH=~/anaconda_ete/bin:$PATH;
unset PYTHONPATH

# Install ETE dependencies
conda install -y pip six numpy pyqt lxml;

# Activate ETE/Anaconda
unset PYTHONPATH; export PATH=~/anaconda_ete/bin:$PATH;

Tip: you can add the line to your .bashrc to make it permanent

Install/Upgrade ETE using PIP
```
pip install --upgrade ete3
```
or using EasyInstall
```
easy_install -U ete3
```
from the sources: Download latest version from PyPI and execute:
```
python setup.py install 
```

Mac OS X

Install ETE using the Anaconda Python distribution

# Download and install Minconda on your home directory
wget https://repo.continuum.io/miniconda/Miniconda-latest-MacOSX-x86_64.sh -O Miniconda-latest-MacOSX-x86_64.sh
bash Miniconda-latest-MacOSX-x86_64.sh -b -p ~/anaconda_ete/
export PATH=~/anaconda_ete/bin:$PATH;
export DYLD_FALLBACK_LIBRARY_PATH=~/anaconda_ete/lib
unset PYTHONPATH
            
# Install ETE dependencies
conda install -y pip six numpy pyqt lxml gcc;
            
# Install/upgrade ETE
pip install --upgrade ete3;

Run the following line to acctivate Anaconda before using ETE:

# Activate ETE/Anaconda
unset PYTHONPATH; export PATH=~/anaconda_ete/bin:$PATH; export DYLD_FALLBACK_LIBRARY_PATH=~/anaconda_ete/lib

Tip: you can add the line to your .bashrc to make it permanent