ETE code is fully functional under IPython Notebook environments, providing inline image visualization.
Inline plots can be generated by calling the
function with the
"%%inline" word as its first argument. This will
produce a SVG image of your tree that is directly shown by the
In addition, ETE's Graphical User Interface (GUI) can be
launched at any moment for a complete interactive interaction with
your tree objects. Just call the
tree.show() method available in
every node. Browse, explore or even modify your tree. When the GUI is closed, changes will be reflected in your Ipython notebook code.
Layout functions, node faces, styles and all drawing features
from ETE treeview module will also be accessible. Phylogenetic
trees can even been displayed together with their alignments: